ReconstructionAndAnalysisForRD53AData < Main

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---+ Reconstruction & Analysis instruction for the data including !RD53A

<br /> %TOC%
---++ Files for !RD53A Analysis
---+++ For YARR

YarrConverterPlugin.cc[ [[%ATTACHURL%/YarrConverterPlugin.cc][YarrConverterPlugin.cc]]]-&gt;find at !YarrEudaqProducer/YarrConverterPlugin.cc after "git clone https://gitlab.cern.ch/YARR/YarrEudaqProducer.git"

Path&#xFF1A;Eutelescope/master/external/eudaq/v1.x-dev2/main/lib/plugins/YarrConverterPlugin.cc

!RD53A.cc[ [[%ATTACHURL%/RD53A.cc][RD53A.cc]]]

Path&#xFF1A;Eutelescope/master/geometries/src/RD53A.cc

!RD53A.h[ [[%ATTACHURL%/RD53A.h][RD53A.h]]]

Path&#xFF1A;Eutelescope/master/geometries/include/RD53A.h
---+++ For bdaq53

!RD53A_50x50_Single.cc[ [[%ATTACHURL%/RD53A_50x50_Single.cc][RD53A_50x50_Single.cc]]]

Path&#xFF1A;Eutelescope/master/geometries/src/RD53A_50x50_Single.cc

!RD53A_50x50_Single.h[ [[%ATTACHURL%/RD53A_50x50_Single.h][RD53A_50x50_Single.h]]]

Path&#xFF1A;Eutelescope/master/geometries/include/RD53A_50x50_Single.h

The steering files and config.cfg are [[https://cernbox.cern.ch/index.php/s/AHiPImcbG3kh7qs][here]].
---++ Instruction : installation of normal EUTelescope

*No bdaq53*

%TWISTY{mode="div" showlink="Show" hidelink="Hide" start="hide" class="twikiHelp"}%
<verbatim>export LANG=C
export LC_ALL=C
export TBRECBASEDIR=/Path/To/Your/TBREC/DIR/
export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase
alias setupATLAS='source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh'
setupATLAS --quiet
localSetupROOT
lsetup cmake
lsetup git
export ILCSOFT=/path/where/you/want/to/install
cd $ILCSOFT
git clone --branch dev-cpp14 https://github.com/terzo/iLCInstall.git
cd $ILCSOFT/iLCInstall
./ilcsoft-install -i examples/eutelescope/release-atlascvmfs-lxplus.cfg</verbatim>

%ENDTWISTY%

*include bdaq53*

%TWISTY{mode="div" showlink="Show" hidelink="Hide" start="hide" class="twikiHelp"}%
<verbatim>export LANG=C
export LC_ALL=C
export TBRECBASEDIR=/Path/To/Your/TBREC/DIR/
export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase
alias setupATLAS='source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh'
setupATLAS --quiet
localSetupROOT
lsetup cmake
lsetup git
export ILCSOFT=/path/where/you/want/to/install
cd $ILCSOFT
git clone https://gitlab.cern.ch/kojin/iLCInstall.git
cd $ILCSOFT/iLCInstall</verbatim>
#to analysis bdaq53 data, modify "releases/v01-19/release-versions.py" to select v1.x-dev2 tag for EUDAQ: Eudaq_version = "tags/v1.x-dev2"
<verbatim>./ilcsoft-install -i examples/eutelescope/release-atlascvmfs-lxplus.cfg</verbatim>

%ENDTWISTY%

<s>%TWISTY{mode="div" showlink="Old information" hidelink="Hide" start="hide" class="twikiHelp"}%</s>

&#x203B;some problem has been remained for this way
<verbatim>export LANG=C
export LC_ALL=C
export TBRECBASEDIR=/Path/To/Your/TBREC/DIR/
export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase
alias setupATLAS='source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh'
setupATLAS --quiet
localSetupROOT
lsetup "cmake 3.10.3"
lsetup python (optional/redundant)
export ILCSOFT=/path/where/you/want/to/install
cd $ILCSOFT
git clone -b dev-findpython https://github.com/eutelescope/ilcinstall $ILCSOFT/iLCInstall
cd $ILCSOFT/iLCInstall

</verbatim>

<br />#Change CMake_path in "examples/eutelescope/release-atlascvmfs-lxplus.cfg"

<br />#CMake_path = "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/Cmake/3.10.0/Linux-x86_64/"

<br />#3.10.0-&gt; 3.10.3

<br />#to analysis bdaq53 data, modify "releases/v01-19/release-versions.py" to select v1.x-dev tag for EUDAQ: Eudaq_version = "branch/v1.x-dev"
<verbatim>./ilcsoft-install -i examples/eutelescope/release-atlascvmfs-lxplus.cfg</verbatim>

<br />#As expected the installation will fail for [[https://github.com/eutelescope/eutelescope/issues/438][this]] reason. Modify $ILCSOFT/v01-19-02/Eutelescope/master/eutelescope/libraries/include/EUTELESCOPE.h by hand to add *kRD53A = 109* to !EUtelDetectorType.

If run into error during installation: Could NOT find Protobuf (missing: Protobuf_INCLUDE_DIR)

Run:
<verbatim>export Protobuf_INCLUDE_DIR=/usr/lib/x86_64-redhat-linux5E</verbatim>

<br />%ENDTWISTY%

# take 20min<br /># when it successfully finished make script like below for the next login
<verbatim>cat > setupITKTB.sh <<EOF
export TB_ANALYSIS=$TBRECBASEDIR/Reconstruction
export TB_RECDIR=$TB_ANALYSIS/TBReconstruction/TBReconstruction-trunk
export ILCSOFT=/path/where/you/installed
export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase
alias setupATLAS='source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh'
setupATLAS --quiet
localSetupROOT && lsetup cmake
source $ILCSOFT/v01-19-02/Eutelescope/master/build_env.sh
EOF</verbatim>

See HowToInstallEUTelescope#x5_B9F_Reconstruction for test run.(Japanese)
---++ some analysis information

some analysis information is written below, you can modify your config.cfg, gear.xml, !RD53A.cc ...etc. if needed!
---+++ Converter
---++++ 2018 July

telescope ID : 1,2,3,4,5,6 (not 0 ~ 5)

SINTEF1(norway) ID : 21

SINTEF3(norway) ID : 22

!RD53A(YARR) ID : 13

!RD53A(bdaq53) ID : 30

KEK94(reference) ID : 20
---++++ 2018 Oct
---+++++ !H6A

telescope : 0~5

!RD53A(YARR) : 13

KEK !RD53A(bdaq53) : 40

UK !RD53A(bdaq53) : 50

KEK82(reference) : 21
---+++++ !H6B

telescope : 1~6

!RD53A(YARR) : 13

!RD53A(bdaq53) : 50

KEK142(FEI4 Flex) ID : 21

KEK132(FEI4 Flex) ID : 22

KEK82(reference) ID : 20
---+++ Clustering

centrerow -&gt;Divide("rd53acentrepixel", 1, 400, 0, 1, 0, "N"); (in !RD53A.cc)

more information about !TGeoVolume::Divide is [[https://root.cern/doc/master/classTGeoVolume.html#abc4f9494937df4582e67c94eef01ae63][here]].
---+++ Hitmaker

"siplanesID" in gear.xml should be the same as "geoID"

----------------------------------------------------------------------------------------------------------------------------------------------------------------

*!!CAUTION!!* This information may not be suitable for !RD53A!(copy from FE65)

# change some hard coding histogram range :
<verbatim style="padding-left: 30px;">emacs -nw $ILCSOFT/v01-19-02/EUTelescope/master/processors/src/EUTelMille.cc</verbatim>

### l.3204-3206<br /># const int NBin = 600;<br /># const double Min = -300.;<br /># const double Max = 300.;
<verbatim style="padding-left: 30px;">emacs -nw $ILCSOFT/v01-19-02/EUTelescope/master/processors/src/EUTelPreAlignment.cc</verbatim>

### l.177 183

# AIDA::IHistogram1D * histo1Da = AIDAProcessor::histogramFactory(this)-&gt;createHistogram1D( (basePath + tempHistoName).c_str(), 100 , -20., 20.);<br /># AIDA::IHistogram1D * histo1Db = AIDAProcessor::histogramFactory(this)-&gt;createHistogram1D( (basePath + tempHistoName).c_str(), 100 , -20., 20.);

----------------------------------------------------------------------------------------------------------------------------------------------------------------
---+++ Pre-Alignment

If pre-align does not work, please check the ID of telescope.

If the ID is 1 to 5,Changing the reference plane of pre-Alignment.
<verbatim>emacs -nw /steering-templates/hitmaker-tmp.xml</verbatim>

# &lt;parameter name = "FixedPlane" type = "int" value = "1" /&gt;

-- %USERSIG{AtlasjSilicon - 2018-07-19}%

---++ Comments

<br /> %COMMENT%
Attachments
Topic attachments
I	Attachment	History	Action	Size	Date	Who
cc	RD53A.cc	r2 r1	manage	2.5 K	2018-11-05 - 05:34	AtlasjSilicon
h	RD53A.h	r1	manage	0.9 K	2018-07-20 - 14:02	AtlasjSilicon
cc	RD53A_50x50_Single.cc	r1	manage	2.3 K	2018-08-08 - 07:19	AtlasjSilicon
h	RD53A_50x50_Single.h	r1	manage	0.9 K	2018-08-08 - 07:19	AtlasjSilicon
cc	YarrConverterPlugin.cc	r1	manage	9.5 K	2018-07-20 - 14:02	AtlasjSilicon
Topic revision: r20 - 2018-11-05 - AtlasjSilicon